PyMAIA_scripts package

Submodules

• PyMAIA_scripts.PyMAIA_convert_DICOM_dataset_to_NIFTI_dataset module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_convert_NIFTI_predictions_to_DICOM_SEG module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_convert_semantic_to_instance_segmentation module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_create_subset module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_downsample_modality module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_order_data_folder module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.PyMAIA_run_pipeline_from_file module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nndet_compute_metric_results module
  • get_arg_parser()
  • get_indices_of_iou()
  • get_unique_iou_thresholds()
  • iou_filter()
  • main()
• PyMAIA_scripts.nndet_create_pipeline module
  • get_arg_parser()
  • main()
  • run_data_and_folder_preparation_step()
  • run_preprocessing_step()
  • run_training_step()
• PyMAIA_scripts.nndet_extract_experiment_predictions module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nndet_prepare_data_folder module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nndet_run_preprocessing module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nndet_run_training module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nnunet_create_pipeline module
  • get_arg_parser()
  • main()
  • run_data_and_folder_preparation_step()
  • run_preprocessing_step()
  • run_training_step()
• PyMAIA_scripts.nnunet_prepare_data_folder module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nnunet_run_plan_and_preprocessing module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nnunet_run_preprocessing module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.nnunet_run_training module
  • get_arg_parser()
  • main()
• PyMAIA_scripts.script_template module
  • get_arg_parser()
  • main()

Module contents