Scripts
=======================

PyMAIA Scripts
---------------
.. toctree::
   :maxdepth: 1

   PyMAIA_convert_DICOM_dataset_to_NIFTI_dataset
   PyMAIA_run_pipeline_from_file
   PyMAIA_convert_semantic_to_instance_segmentation
   PyMAIA_create_subset
   PyMAIA_order_data_folder
   PyMAIA_downsample_modality
   PyMAIA_convert_NIFTI_predictions_to_DICOM_SEG

PyMAIA Scripts for nnDetection
-------------------------------
.. toctree::
   :maxdepth: 1

   nndet_create_pipeline
   nndet_prepare_data_folder
   nndet_run_preprocessing
   nndet_run_training
   nndet_extract_experiment_predictions
   nndet_compute_metric_results


PyMAIA Scripts for nnUNet
-----------------------------
.. toctree::
   :maxdepth: 1

   nnunet_create_pipeline
   nnunet_prepare_data_folder
   nnunet_run_preprocessing
   nnunet_run_plan_and_preprocessing
   nnunet_run_training